STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478979Short stature homeobox. (301 aa)    
Predicted Functional Partners:
prdm16
Si:ch211-263k4.2.
   
 0.805
sox5
SRY-box transcription factor 5.
    
 
 0.730
banp
BTG3 associated nuclear protein.
      
 0.670
otp
Orthopedia homeobox.
   
  
 0.635
LOC103457836
T-box transcription factor 18.
   
 0.612
tbx15
T-box transcription factor 15.
   
 0.612
foxb1
Forkhead box B1a.
   
  
 0.610
ENSPREP00000030218
Forkhead box B2.
   
  
 0.610
GHITM
Growth hormone inducible transmembrane protein.
      
 0.603
yap1
Yes-associated protein 1.
      
 0.596
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.