STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103460673VPS9 domain-containing protein. (710 aa)    
Predicted Functional Partners:
LOC103474679
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.671
RABGEF1
RAB guanine nucleotide exchange factor 1.
    
 0.671
LOC103470250
Uncharacterized protein.
    
 0.671
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.633
CD2AP
CD2 associated protein.
    
 
 0.617
sh3d21
SH3 domain containing 21.
    
 
 0.617
sh3kbp1
SH3-domain kinase binding protein 1.
    
 
 0.617
gapvd1
GTPase activating protein and VPS9 domains 1.
    
0.590
LOC103461746
PH domain-containing protein.
    
 0.553
RAB31
RAB31, member RAS oncogene family.
    
 0.526
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.