STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcd3ATP-binding cassette, sub-family D (ALD), member 3a. (659 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.997
pex3
Peroxisomal biogenesis factor 3.
   
 0.940
abcd2
ATP-binding cassette, sub-family D (ALD), member 2.
   
 0.926
LOC103460228
ATP-binding cassette, sub-family D (ALD), member 1.
   
 0.926
rad51
RAD51 recombinase.
   
   0.917
pex16
Peroxisomal membrane protein PEX16.
     
 0.879
pex2
Peroxisomal biogenesis factor 2.
    
 0.866
nudcd1
NudC domain containing 1.
    
   0.835
pex14
Peroxisomal biogenesis factor 14.
   
 0.832
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 
 0.823
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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