STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frmd8FERM domain containing 8. (402 aa)    
Predicted Functional Partners:
itgb1bp1
Integrin beta 1 binding protein 1.
    
 
 0.762
znrd2
Zinc ribbon domain containing 2.
      
 0.712
SLC25A45
Solute carrier family 25 member 45; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.597
ubox5
U-box domain containing 5.
   
  
 0.597
LOC103479084
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
      
 0.542
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
      
 0.542
irak1bp1
Ectonucleotide pyrophosphatase/phosphodiesterase 5.
   
  
 0.520
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.503
LOC103475725
Protein phosphatase, Mg2+/Mn2+ dependent, 1Nb (putative).
   
  
 0.503
pbld
Phenazine biosynthesis like protein domain containing.
      
 0.494
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.