STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frmd8FERM domain containing 8. (402 aa)    
Predicted Functional Partners:
itgb1bp1
Integrin beta 1 binding protein 1.
    
 
 0.833
znrd2
Zinc ribbon domain containing 2.
      
 0.534
SLC25A45
Solute carrier family 25 member 45; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.523
clg9h12orf43
Uncharacterized protein.
   
    0.520
pdcd10
Programmed cell death 10b.
    
 
 0.519
LOC103479084
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
      
 0.430
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
      
 0.430
SNX27
Sorting nexin 27.
    
 
 0.430
snx17
Sorting nexin 17.
    
 
 0.430
LOC103472691
Uncharacterized protein.
    
 
 0.430
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.