STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scaf1SR-related CTD-associated factor 1. (1358 aa)    
Predicted Functional Partners:
sh3pxd2b
SH3 and PX domains 2B.
      
 0.826
hmmr
Hyaluronan-mediated motility receptor (RHAMM).
    
 
 0.747
INSC
INSC spindle orientation adaptor protein.
   
  
 0.707
prr12
Proline rich 12a.
   
  
 0.683
med25
Mediator complex subunit 25.
   
  
 0.637
ankrd6
Ankyrin repeat domain 6.
    
 
 0.618
ENSPREP00000004657
Amyloid beta (A4) precursor protein-binding, family B, member 3.
    
 
 0.607
ENSPREP00000003031
Uncharacterized protein.
      
 0.598
rcn3
Reticulocalbin 3, EF-hand calcium binding domain.
      
 0.568
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
   0.566
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.