LOC103464471 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103464471

Tumor necrosis factor receptor superfamily, member 1B. (441 aa)

Predicted Functional Partners:

ENSPREP00000029074

0.991

LOC103469572

0.985

LOC103473816

0.985

tnfrsf1a

0.965

LOC103477745

0.904

ENSPREP00000020171

0.900

LOC103473320

0.864

tradd

0.831

traf3

0.819

tnfsf11

0.731

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000020171	LOC103464471	ENSPREP00000020171	ENSPREP00000008103	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member 1B.	0.900
ENSPREP00000020171	LOC103477745	ENSPREP00000020171	ENSPREP00000005122	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor b (TNF superfamily, member 2).	0.900
ENSPREP00000020171	tnfrsf1a	ENSPREP00000020171	ENSPREP00000016244	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member 1a.	0.900
ENSPREP00000029074	LOC103464471	ENSPREP00000029074	ENSPREP00000008103	Tumor necrosis factor a (TNF superfamily, member 2).	Tumor necrosis factor receptor superfamily, member 1B.	0.991
ENSPREP00000029074	tnfrsf1a	ENSPREP00000029074	ENSPREP00000016244	Tumor necrosis factor a (TNF superfamily, member 2).	Tumor necrosis factor receptor superfamily, member 1a.	0.960
ENSPREP00000029074	tnfsf11	ENSPREP00000029074	ENSPREP00000030013	Tumor necrosis factor a (TNF superfamily, member 2).	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.588
LOC103464471	ENSPREP00000020171	ENSPREP00000008103	ENSPREP00000020171	Tumor necrosis factor receptor superfamily, member 1B.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.900
LOC103464471	ENSPREP00000029074	ENSPREP00000008103	ENSPREP00000029074	Tumor necrosis factor receptor superfamily, member 1B.	Tumor necrosis factor a (TNF superfamily, member 2).	0.991
LOC103464471	LOC103469572	ENSPREP00000008103	ENSPREP00000021110	Tumor necrosis factor receptor superfamily, member 1B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.985
LOC103464471	LOC103473320	ENSPREP00000008103	ENSPREP00000028561	Tumor necrosis factor receptor superfamily, member 1B.	TNF receptor-associated factor.	0.864
LOC103464471	LOC103473816	ENSPREP00000008103	ENSPREP00000022240	Tumor necrosis factor receptor superfamily, member 1B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.985
LOC103464471	LOC103477745	ENSPREP00000008103	ENSPREP00000005122	Tumor necrosis factor receptor superfamily, member 1B.	Tumor necrosis factor b (TNF superfamily, member 2).	0.904
LOC103464471	tnfrsf1a	ENSPREP00000008103	ENSPREP00000016244	Tumor necrosis factor receptor superfamily, member 1B.	Tumor necrosis factor receptor superfamily, member 1a.	0.965
LOC103464471	tnfsf11	ENSPREP00000008103	ENSPREP00000030013	Tumor necrosis factor receptor superfamily, member 1B.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.731
LOC103464471	tradd	ENSPREP00000008103	ENSPREP00000001843	Tumor necrosis factor receptor superfamily, member 1B.	Tnfrsf1a-associated via death domain.	0.831
LOC103464471	traf3	ENSPREP00000008103	ENSPREP00000006242	Tumor necrosis factor receptor superfamily, member 1B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.819
LOC103469572	LOC103464471	ENSPREP00000021110	ENSPREP00000008103	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Tumor necrosis factor receptor superfamily, member 1B.	0.985
LOC103469572	LOC103473816	ENSPREP00000021110	ENSPREP00000022240	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.908
LOC103469572	LOC103477745	ENSPREP00000021110	ENSPREP00000005122	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Tumor necrosis factor b (TNF superfamily, member 2).	0.444
LOC103469572	tnfrsf1a	ENSPREP00000021110	ENSPREP00000016244	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Tumor necrosis factor receptor superfamily, member 1a.	0.993