STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476014Retinal outer segment membrane protein 1a. (347 aa)    
Predicted Functional Partners:
rnf128
RING-type domain-containing protein.
    
 
 0.922
LOC103465828
PNPLA domain-containing protein.
      
 0.920
dusp6
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.689
pou4f3
POU domain protein.
      
 0.649
ENSPREP00000006573
Uncharacterized protein.
      
 0.604
LOC103459460
Patatin-like phospholipase domain containing 8.
      
 0.604
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
     
 0.601
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
     
 0.601
ENSPREP00000031106
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.570
LOC103476272
POU domain protein.
      
 0.522
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.