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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476014Retinal outer segment membrane protein 1a. (347 aa)    
Predicted Functional Partners:
rom1
Retinal outer segment membrane protein 1b.
  
  
0.877
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
   
  
 0.580
LOC103467179
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.573
rnf128
RING-type domain-containing protein.
    
 
 0.569
LOC103465828
PNPLA domain-containing protein.
      
 0.549
LOC103472839
Vesicle-associated membrane protein 1.
   
  
 0.480
LOC103476853
Retinal G protein coupled receptor a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.476
LOC103473896
Cystatin domain-containing protein.
      
 0.471
dusp6
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.440
guca1a
Guanylate cyclase activator 1A.
   
  
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.