STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pet100Uncharacterized protein. (64 aa)    
Predicted Functional Partners:
NDUFB1
NADH:ubiquinone oxidoreductase subunit B1.
   
  
 0.875
PET117
PET117 cytochrome c oxidase chaperone.
   
 
 0.822
Ndufb4
NADH:ubiquinone oxidoreductase subunit B4.
   
  
 0.783
ENSPREP00000008370
Uncharacterized protein.
      
 0.758
LOC103478033
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.721
pum1
Pumilio RNA-binding family member 1.
    
 
 0.715
pum2
Pumilio RNA-binding family member 2.
    
 
 0.715
Pum2
Uncharacterized protein.
    
 
 0.715
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
   
 
 0.684
LOC103479918
Cytochrome C oxidase assembly factor 5.
   
  
 0.661
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.