STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnqCyclin Q; Belongs to the cyclin family. (252 aa)    
Predicted Functional Partners:
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
   
 0.883
cdk13
Cyclin-dependent kinase 13.
   
 0.813
cdk12
Cyclin-dependent kinase 12.
   
 0.813
supt5h
Transcription elongation factor SPT5.
    
 0.738
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.698
ccnh
Cyclin H; Belongs to the cyclin family.
     
0.672
gtf2b
General transcription factor IIB.
     
 0.654
Ctdp1
FCP1 homology domain-containing protein.
   
 
 0.652
mnat1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
     
 0.614
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 
 0.606
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.