STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfpl1Zinc finger protein-like 1. (324 aa)    
Predicted Functional Partners:
Acbd5
ACB domain-containing protein.
    
   0.728
LOC103482125
Acyl-CoA binding domain containing 4.
    
   0.728
LOC103478958
ACB domain-containing protein.
    
   0.728
tm9sf3
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.724
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
   
 
 0.686
LOC103464667
VAMP (vesicle-associated membrane protein)-associated protein B and C.
   
 
 0.686
fam91a1
Family with sequence similarity 91 member A1.
      
 0.678
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
      
 0.628
tmf1
TATA element modulatory factor 1.
      
 0.603
fam177a1
Family with sequence similarity 177 member A1.
      
 0.602
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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