STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473558RasGEF domain family, member 1Bb. (607 aa)    
Predicted Functional Partners:
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
    
 
 0.613
ccnk
Cyclin K; Belongs to the cyclin family.
     
  0.520
haus8
Uncharacterized protein.
      
 0.503
unc5d
Unc-5 netrin receptor Db.
      
 0.493
LOC103473501
Unc-5 netrin receptor Da.
      
 0.493
LOC103472214
Raftlin, lipid raft linker 1a.
      
 0.473
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 0.457
nf1
Neurofibromin 1b.
      
 0.434
LOC103474875
Hairy-related 13.
      
 0.404
glipr2
GLI pathogenesis-related 2, like; Belongs to the CRISP family.
   
  
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.