Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cryzl1Crystallin, zeta (quinone reductase)-like 1. (352 aa)    
Predicted Functional Partners:
clg6h12orf4
Zgc:154077.
   
   0.922
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
   
   0.903
xylb
Xylulokinase homolog (H. influenzae).
  
  
 0.891
urb1
URB1 ribosome biogenesis homolog.
      
 0.869
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
    
   0.827
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
  
   
 0.769
wdr19
WD repeat domain 19.
      
 0.725
pgk1
Phosphoglycerate kinase.
   
  
 0.677
mrpl1
Mitochondrial ribosomal protein L1.
      
 0.670
ENSPREP00000021544
Transmembrane protein 242.
      
 0.668
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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