LOC103479038 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103479038

Regulator of G protein signaling 18. (232 aa)

Predicted Functional Partners:

LOC103458452

0.610

LOC103463549

0.610

LOC103470235

0.610

LOC103470237

0.610

LOC103463374

0.593

ENSPREP00000027509

0.577

ENSPREP00000008230

0.563

LOC103479039

0.563

LOC103463369

0.563

rgs3

0.563

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008230	ENSPREP00000027509	ENSPREP00000008230	ENSPREP00000027509	Regulator of G protein signaling 1.	Uncharacterized protein.	0.615
ENSPREP00000008230	LOC103458452	ENSPREP00000008230	ENSPREP00000015705	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.590
ENSPREP00000008230	LOC103463374	ENSPREP00000008230	ENSPREP00000015440	Regulator of G protein signaling 1.	Regulator of G protein signaling 8.	0.563
ENSPREP00000008230	LOC103463549	ENSPREP00000008230	ENSPREP00000017763	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.590
ENSPREP00000008230	LOC103470235	ENSPREP00000008230	ENSPREP00000029602	Regulator of G protein signaling 1.	Uncharacterized protein.	0.590
ENSPREP00000008230	LOC103470237	ENSPREP00000008230	ENSPREP00000029648	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.590
ENSPREP00000008230	LOC103479038	ENSPREP00000008230	ENSPREP00000008218	Regulator of G protein signaling 1.	Regulator of G protein signaling 18.	0.563
ENSPREP00000008230	rgs3	ENSPREP00000008230	ENSPREP00000023757	Regulator of G protein signaling 1.	Uncharacterized protein.	0.412
ENSPREP00000027509	ENSPREP00000008230	ENSPREP00000027509	ENSPREP00000008230	Uncharacterized protein.	Regulator of G protein signaling 1.	0.615
ENSPREP00000027509	LOC103458452	ENSPREP00000027509	ENSPREP00000015705	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.658
ENSPREP00000027509	LOC103463369	ENSPREP00000027509	ENSPREP00000015630	Uncharacterized protein.	Si:ch211-117l17.5.	0.624
ENSPREP00000027509	LOC103463374	ENSPREP00000027509	ENSPREP00000015440	Uncharacterized protein.	Regulator of G protein signaling 8.	0.653
ENSPREP00000027509	LOC103463549	ENSPREP00000027509	ENSPREP00000017763	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.655
ENSPREP00000027509	LOC103470235	ENSPREP00000027509	ENSPREP00000029602	Uncharacterized protein.	Uncharacterized protein.	0.654
ENSPREP00000027509	LOC103470237	ENSPREP00000027509	ENSPREP00000029648	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.653
ENSPREP00000027509	LOC103479038	ENSPREP00000027509	ENSPREP00000008218	Uncharacterized protein.	Regulator of G protein signaling 18.	0.577
ENSPREP00000027509	LOC103479039	ENSPREP00000027509	ENSPREP00000008244	Uncharacterized protein.	Regulator of G protein signaling 13.	0.528
ENSPREP00000027509	rgs3	ENSPREP00000027509	ENSPREP00000023757	Uncharacterized protein.	Uncharacterized protein.	0.518
LOC103458452	ENSPREP00000008230	ENSPREP00000015705	ENSPREP00000008230	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 1.	0.590
LOC103458452	ENSPREP00000027509	ENSPREP00000015705	ENSPREP00000027509	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.658