STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471124Ankyrin repeat and KH domain containing 1. (2678 aa)    
Predicted Functional Partners:
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
   0.807
recql4
RecQ helicase-like 4.
    
   0.655
LOC103482297
Negative regulator of reactive oxygen species.
   
  
 0.624
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.594
cog3
Component of oligomeric golgi complex 3.
   
    0.592
LOC103458130
BHLH domain-containing protein.
   
    0.586
ENSPREP00000023487
Uncharacterized protein.
   
    0.586
clg5h3orf67
Zgc:162324.
      
 0.570
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
   0.561
pds5a
PDS5 cohesin associated factor A.
   
    0.535
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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