Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam214aFamily with sequence similarity 214 member A. (1115 aa)    
Predicted Functional Partners:
capsl
Calcyphosine-like b.
      
 0.746
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.618
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.603
ENSPREP00000029285
Uncharacterized protein.
      
 0.603
WDR7
WD repeat domain 7.
      
 0.603
zfand2a
Zinc finger, AN1-type domain 2A.
      
 0.600
hmg20b
High mobility group 20B.
      
 0.591
MEX3D
Mex-3 RNA binding family member D.
      
 0.586
LOC103470199
RING-type domain-containing protein.
      
 0.586
btbd2
BTB (POZ) domain containing 2b.
      
 0.583
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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