STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly-U binding splicing factor b. (540 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.989
smndc1
Survival motor neuron domain containing 1.
   
 0.978
sap30bp
SAP30 binding protein.
   
   0.965
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.963
sf3b3
Splicing factor 3b, subunit 3.
    
 0.958
LOC103460651
Cwf21 domain-containing protein.
   
 
 0.945
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.944
sf3b1
Splicing factor 3b, subunit 1.
   
 0.940
sf3a3
Splicing factor 3a, subunit 3.
   
 0.931
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.931
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.