STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
onecut1One cut domain family member. (465 aa)    
Predicted Functional Partners:
ENSPREP00000003149
BHLH domain-containing protein.
   
 0.707
foxa2
Forkhead box A2.
  
 
 
 0.701
pdx1
Pancreatic and duodenal homeobox 1.
    
 0.629
fam214a
Family with sequence similarity 214 member A.
      
 0.574
ENSPREP00000018401
NK6 homeobox 1.
   
 
 0.557
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.549
LOC103458174
Notochord homeobox.
      
 0.532
hhex
Homeobox domain-containing protein.
   
  
 0.528
CCNG2
Cyclin G2; Belongs to the cyclin family.
    
 
 0.521
LOC103473919
Cyclin G2; Belongs to the cyclin family.
    
 
 0.521
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.