STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCC1ATP binding cassette subfamily C member 1. (1512 aa)    
Predicted Functional Partners:
LOC103464796
ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.
  
  
 
0.902
Katnal2
Katanin p60 subunit A-like 2.
  
 0.568
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 0.490
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.463
LOC103458407
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.459
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
     
 0.452
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.443
ENSPREP00000004349
Potassium inwardly-rectifying channel, subfamily J, member 2b.
   
 0.432
ENSPREP00000005145
Si:ch211-113j13.2.
   
 0.432
kcnj5
Potassium inwardly-rectifying channel, subfamily J, member 5.
   
 0.432
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.