STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCC1ATP binding cassette subfamily C member 1. (1512 aa)    
Predicted Functional Partners:
LOC103464796
ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.
  
  
 
0.902
ENSPREP00000021856
UDP glucuronosyltransferase 1 family, polypeptide B1.
   
  
 0.586
ENSPREP00000021887
Uncharacterized protein.
   
  
 0.586
pex6
Peroxisomal biogenesis factor 6.
   
 0.578
LOC103464148
Uncharacterized protein.
   
 
 0.560
LOC103462236
ATP-binding cassette, sub-family G (WHITE), member 2c.
   
 0.556
ENSPREP00000002302
ATP-binding cassette, sub-family G (WHITE), member 2d.
   
 0.556
LOC103480848
ATP-binding cassette, sub-family G (WHITE), member 2a.
   
 0.556
top2a
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
    
 
 0.546
LOC103459623
PDZ domain containing 1.
    
 0.542
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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