STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463269Microtubule-associated protein 1Sa. (1241 aa)    
Predicted Functional Partners:
LOC103474660
Zinc finger protein 296.
      
 0.593
BCL11B
BAF chromatin remodeling complex subunit BCL11B.
      
 0.593
LOC103457828
Im:7142702.
      
 0.593
fmr1
Fragile X mental retardation 1.
    
 
 0.585
LOC103461055
Fragile X mental retardation 1.
    
 
 0.585
LOC103480164
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.565
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.565
LOC103464518
TAR DNA binding protein.
    
 
 0.542
tardbp
TAR DNA binding protein, like.
    
 
 0.542
socs3
Suppressor of cytokine signaling 3.
    
 
 0.493
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.