Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
susd5Uncharacterized protein. (846 aa)    
Predicted Functional Partners:
tmem108
Transmembrane protein 108.
      
 0.917
LOC103464762
Uncharacterized protein.
      
 0.670
sned1
Sushi, nidogen and EGF-like domains 1.
    
 0.619
fancm
Uncharacterized protein.
    
 0.586
LOC103459402
Nuclear receptor interacting protein 2.
      
 0.528
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.528
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.511
glt8d1
Glycosyltransferase 8 domain containing 1.
      
 0.503
glt8d2
Glycosyltransferase 8 domain containing 2.
      
 0.503
adamtsl2
ADAMTS-like 2.
      
 0.491
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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