Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lysmd3LysM, putative peptidoglycan-binding, domain containing 3. (319 aa)    
Predicted Functional Partners:
ENSPREP00000023951
Fibrinogen C-terminal domain-containing protein.
      
 0.665
fcn2
Fibrinogen C domain containing 1.
      
 0.665
pan3
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]
      
 0.568
mblac2
Metallo-beta-lactamase domain containing 2.
 
    
 0.530
arrdc3
Arrestin domain containing 3a.
      
 0.528
LOC103464137
Protocadherin 18a.
      
 0.503
pcdh18
Protocadherin 18b.
      
 0.503
LOC103466638
Family with sequence similarity 174 member B.
      
 0.503
rps15a
Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
      
 0.464
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1.
      
 0.464
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.