STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465136RNA pseudouridine synthase D4. (386 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 0.916
Ngrn
Uncharacterized protein.
   
 0.907
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
  
 
 0.897
trub2
TruB pseudouridine (psi) synthase family member 2.
  
 0.887
rcc1l
RCC1 like.
    
 0.832
pus7
Pseudouridine synthase 7.
   
 
 0.818
mrm3
SpoU_sub_bind domain-containing protein.
  
 
 0.816
pus7l
Pseudouridine synthase 7 like.
   
 
 0.795
malsu1
Si:zfos-1192g2.3.
  
 
 0.787
mterf3
Mitochondrial transcription termination factor 3.
   
 0.757
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.