STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476022Si:dkey-35m8.1. (207 aa)    
Predicted Functional Partners:
ccdc115
Coiled-coil domain containing 115.
      
 0.650
gpr137c
G protein-coupled receptor 137c.
   
  
 0.607
Tmem221
Si:ch211-125m10.6.
      
 0.601
gramd1c
GRAM domain containing 1c.
      
 0.600
svopl
SVOP-like.
   
  
 0.553
gcnt7
Glucosaminyl (N-acetyl) transferase family member 7.
      
 0.494
tmc5
Transmembrane channel-like protein.
     
 0.472
LOC103481871
Uncharacterized protein.
      
 0.463
tmem38a
Transmembrane protein 38A.
      
 0.463
LOC103467277
G protein-coupled receptor 153.
      
 0.460
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.