STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000008391Uncharacterized protein. (178 aa)    
Predicted Functional Partners:
LOC103460031
Uncharacterized protein.
  
0.830
capns1
Calpain, small subunit 1 b.
  
0.830
ENSPREP00000034079
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
 
  
 0.748
cast
Uncharacterized protein.
   
 0.740
capn5
Calpain 5a; Belongs to the peptidase C2 family.
 
  
 0.700
LOC103476305
Calpain 5b; Belongs to the peptidase C2 family.
 
  
 0.670
ENSPREP00000027033
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
 
      0.665
LOC103460694
Zgc:136872; Belongs to the peptidase C2 family.
 
   
  0.642
ENSPREP00000008612
Zgc:136872; Belongs to the peptidase C2 family.
 
   
  0.641
CAPN6
Calpain 6; Belongs to the peptidase C2 family.
 
  
 0.606
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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