STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
larp1La ribonucleoprotein domain family, member 1. (984 aa)    
Predicted Functional Partners:
dkc1
Dyskeratosis congenita 1, dyskerin.
   
 
 0.717
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.684
DHX15
DEAH-box helicase 15.
   
 
 0.639
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.626
LOC103480693
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 
 0.626
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.602
rc3h1
Ring finger and CCCH-type domains 1b.
    
   0.585
akap1
A kinase (PRKA) anchor protein 1b.
    
 
 0.572
eif4b
Eukaryotic translation initiation factor 4Bb.
   
 
 0.561
LOC103470872
Ribosomal protein L26.
    
   0.560
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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