STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stk40Serine/threonine kinase 40. (441 aa)    
Predicted Functional Partners:
LOC103464789
Tribbles pseudokinase 3.
    
 
 0.965
etv5
Ets variant 5a.
    
   0.962
cop1
COP1 E3 ubiquitin ligase.
    
 
 0.962
c-fos
V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.
   
 0.955
fosl2
Fos-like antigen 2.
   
 0.942
yars1
Tyrosine--tRNA ligase.
      
 0.921
cabin1
Calcineurin binding protein 1.
      
 0.919
LOC103475084
ETS domain-containing protein.
    
   0.917
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
 
 0.908
LOC103464508
JunB proto-oncogene, AP-1 transcription factor subunit a.
    
 0.840
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.