STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stk40Serine/threonine kinase 40. (441 aa)    
Predicted Functional Partners:
cop1
COP1 E3 ubiquitin ligase.
    
 
 0.772
LOC103464789
Tribbles pseudokinase 3.
    
 
0.721
LOC103475084
ETS domain-containing protein.
   
   0.684
etv5
Ets variant 5a.
   
   0.667
yars1
Tyrosine--tRNA ligase.
      
 0.646
cabin1
Calcineurin binding protein 1.
    
 
 0.619
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
 
 0.586
poli
Polymerase (DNA directed) iota.
    
 
 0.582
c-fos
V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.
   
 0.579
fosl2
Fos-like antigen 2.
   
 0.578
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.