Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC103457474Papilin b, proteoglycan-like sulfated glycoprotein. (574 aa)    
Predicted Functional Partners:
Mb
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
    
 0.521
tmem160
Transmembrane protein 160.
      
 0.501
ENSPREP00000028622
Uncharacterized protein.
    
 0.443
ngb
GLOBIN domain-containing protein; Belongs to the globin family.
    
 0.440
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
      
 0.434
r3hcc1
R3H domain and coiled-coil containing 1.
      
 0.407
smg7
SMG7 nonsense mediated mRNA decay factor.
      
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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