LOC103460018 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103460018

Uncharacterized protein. (175 aa)

Predicted Functional Partners:

LOC103475970

0.938

LOC103475975

0.938

ptgr2

0.938

ptges

0.938

ptges2

0.931

ZADH2

0.916

prxl2b

0.915

ENSPREP00000008295

0.906

LOC103476570

0.906

hpgd

0.905

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008295	LOC103460018	ENSPREP00000008295	ENSPREP00000008485	Uncharacterized protein.	Uncharacterized protein.	0.906
ENSPREP00000008295	LOC103476570	ENSPREP00000008295	ENSPREP00000008337	Uncharacterized protein.	Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.902
ENSPREP00000008295	hpgd	ENSPREP00000008295	ENSPREP00000006011	Uncharacterized protein.	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.906
ENSPREP00000008295	prxl2b	ENSPREP00000008295	ENSPREP00000008333	Uncharacterized protein.	Peroxiredoxin like 2B.	0.901
ENSPREP00000008295	ptges	ENSPREP00000008295	ENSPREP00000032289	Uncharacterized protein.	Prostaglandin E synthase.	0.918
ENSPREP00000008295	ptges2	ENSPREP00000008295	ENSPREP00000005602	Uncharacterized protein.	Prostaglandin E synthase 2-like.	0.907
LOC103460018	ENSPREP00000008295	ENSPREP00000008485	ENSPREP00000008295	Uncharacterized protein.	Uncharacterized protein.	0.906
LOC103460018	LOC103475970	ENSPREP00000008485	ENSPREP00000005995	Uncharacterized protein.	Prostaglandin reductase 1.	0.938
LOC103460018	LOC103475975	ENSPREP00000008485	ENSPREP00000006027	Uncharacterized protein.	Prostaglandin reductase 1.	0.938
LOC103460018	LOC103476570	ENSPREP00000008485	ENSPREP00000008337	Uncharacterized protein.	Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.906
LOC103460018	ZADH2	ENSPREP00000008485	ENSPREP00000020998	Uncharacterized protein.	Zinc binding alcohol dehydrogenase domain containing 2.	0.916
LOC103460018	hpgd	ENSPREP00000008485	ENSPREP00000006011	Uncharacterized protein.	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.905
LOC103460018	prxl2b	ENSPREP00000008485	ENSPREP00000008333	Uncharacterized protein.	Peroxiredoxin like 2B.	0.915
LOC103460018	ptges	ENSPREP00000008485	ENSPREP00000032289	Uncharacterized protein.	Prostaglandin E synthase.	0.938
LOC103460018	ptges2	ENSPREP00000008485	ENSPREP00000005602	Uncharacterized protein.	Prostaglandin E synthase 2-like.	0.931
LOC103460018	ptgr2	ENSPREP00000008485	ENSPREP00000019733	Uncharacterized protein.	Prostaglandin reductase 2.	0.938
LOC103475970	LOC103460018	ENSPREP00000005995	ENSPREP00000008485	Prostaglandin reductase 1.	Uncharacterized protein.	0.938
LOC103475970	hpgd	ENSPREP00000005995	ENSPREP00000006011	Prostaglandin reductase 1.	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.938
LOC103475975	LOC103460018	ENSPREP00000006027	ENSPREP00000008485	Prostaglandin reductase 1.	Uncharacterized protein.	0.938
LOC103475975	hpgd	ENSPREP00000006027	ENSPREP00000006011	Prostaglandin reductase 1.	15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.938