STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465129Linker histone H1M. (214 aa)    
Predicted Functional Partners:
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.619
larp7
La ribonucleoprotein domain family, member 7.
    
   0.619
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.612
LOC103470692
Histone H2A; Belongs to the histone H2A family.
   
 
 0.612
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.599
actl6a
Actin-like 6A; Belongs to the actin family.
    
 
 0.592
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.554
ENSPREP00000026819
Si:ch211-103n10.5.
   
 0.533
noc2l
NOC2-like nucleolar associated transcriptional repressor.
    
   0.527
figla
Folliculogenesis specific bHLH transcription factor.
   
  
 0.520
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.