rbm27 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbm27

RNA binding motif protein 27. (873 aa)

Predicted Functional Partners:

ZFC3H1

0.909

mtrex

0.850

pabpn1

0.832

PABPN1L

0.832

papolg

0.804

YTHDC2

0.761

rnps1

0.759

NCBP1

0.742

zc3h3

0.732

ncbp2

0.731

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCBP1	PABPN1L	ENSPREP00000008871	ENSPREP00000033248	Nuclear cap binding protein subunit 1.	Poly(A) binding protein nuclear 1 like, cytoplasmic.	0.908
NCBP1	YTHDC2	ENSPREP00000008871	ENSPREP00000017945	Nuclear cap binding protein subunit 1.	YTH domain containing 2.	0.897
NCBP1	ZFC3H1	ENSPREP00000008871	ENSPREP00000025162	Nuclear cap binding protein subunit 1.	Zinc finger C3H1-type containing.	0.801
NCBP1	mtrex	ENSPREP00000008871	ENSPREP00000004435	Nuclear cap binding protein subunit 1.	Mtr4 exosome RNA helicase.	0.978
NCBP1	ncbp2	ENSPREP00000008871	ENSPREP00000031952	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
NCBP1	pabpn1	ENSPREP00000008871	ENSPREP00000016786	Nuclear cap binding protein subunit 1.	Poly(A) binding protein, nuclear 1.	0.972
NCBP1	papolg	ENSPREP00000008871	ENSPREP00000015352	Nuclear cap binding protein subunit 1.	Poly(A) polymerase gamma.	0.972
NCBP1	rbm27	ENSPREP00000008871	ENSPREP00000008513	Nuclear cap binding protein subunit 1.	RNA binding motif protein 27.	0.742
NCBP1	rnps1	ENSPREP00000008871	ENSPREP00000002540	Nuclear cap binding protein subunit 1.	RNA binding protein S1, serine-rich domain.	0.891
NCBP1	zc3h3	ENSPREP00000008871	ENSPREP00000013131	Nuclear cap binding protein subunit 1.	Zinc finger CCCH-type containing 3.	0.728
PABPN1L	NCBP1	ENSPREP00000033248	ENSPREP00000008871	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Nuclear cap binding protein subunit 1.	0.908
PABPN1L	YTHDC2	ENSPREP00000033248	ENSPREP00000017945	Poly(A) binding protein nuclear 1 like, cytoplasmic.	YTH domain containing 2.	0.733
PABPN1L	ZFC3H1	ENSPREP00000033248	ENSPREP00000025162	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Zinc finger C3H1-type containing.	0.835
PABPN1L	mtrex	ENSPREP00000033248	ENSPREP00000004435	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Mtr4 exosome RNA helicase.	0.843
PABPN1L	ncbp2	ENSPREP00000033248	ENSPREP00000031952	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.909
PABPN1L	pabpn1	ENSPREP00000033248	ENSPREP00000016786	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Poly(A) binding protein, nuclear 1.	0.905
PABPN1L	papolg	ENSPREP00000033248	ENSPREP00000015352	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Poly(A) polymerase gamma.	0.904
PABPN1L	rbm27	ENSPREP00000033248	ENSPREP00000008513	Poly(A) binding protein nuclear 1 like, cytoplasmic.	RNA binding motif protein 27.	0.832
PABPN1L	zc3h3	ENSPREP00000033248	ENSPREP00000013131	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Zinc finger CCCH-type containing 3.	0.513
YTHDC2	NCBP1	ENSPREP00000017945	ENSPREP00000008871	YTH domain containing 2.	Nuclear cap binding protein subunit 1.	0.897