STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem259Transmembrane protein 259. (628 aa)    
Predicted Functional Partners:
cachd1
Cache domain containing 1.
      
 0.906
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
 
 0.887
tmub2
Transmembrane and ubiquitin-like domain containing 2.
    
 
 0.845
RNF5
Ring finger protein 5.
    
 
 0.790
rnf185
Ring finger protein 185.
    
 
 0.790
Clg1h6orf120
Zgc:77929.
      
 0.779
emc1
ER membrane protein complex subunit 1.
      
 0.775
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
      
 0.758
stt3a
STT3 oligosaccharyltransferase complex catalytic subunit A.
      
 0.758
ggcx
Gamma-glutamyl carboxylase.
      
 0.758
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.