STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479045Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
fga
Fibrinogen alpha chain.
   
 0.694
fgg
Fibrinogen gamma chain.
   
 0.664
hgd
Homogentisate 1,2-dioxygenase.
   
    0.597
fgb
Fibrinogen beta chain.
   
 0.577
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.522
tgm2
Transglutaminase 2b.
    
 0.476
LOC103475949
Coagulation factor XIII, A1 polypeptide b.
    
 0.476
f13a1
TGc domain-containing protein.
    
 0.476
LOC103464830
Transglutaminase 5, like.
    
 0.476
LOC103464862
Transglutaminase 5, like.
    
 0.476
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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