STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stx6Syntaxin 6; Belongs to the syntaxin family. (255 aa)    
Predicted Functional Partners:
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.995
stx16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.995
ENSPREP00000001234
Vesicle-associated membrane protein 4.
    
 0.987
ENSPREP00000004746
V-SNARE coiled-coil homology domain-containing protein.
    
 0.962
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.933
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
 
 
 0.928
vps51
VPS51 subunit of GARP complex.
    
 0.910
snap29
Synaptosome associated protein 29.
   
 0.904
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.898
snap23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.894
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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