STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462157Lysyl oxidase-like 1. (561 aa)    
Predicted Functional Partners:
fbln5
Fibulin 5.
   
 
 0.766
rnf17
Ring finger protein 17.
    
 
 0.733
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
 0.692
ENSPREP00000008006
Formyl peptide receptor 1.
    
 0.494
sdr39u1
Short chain dehydrogenase/reductase family 39U, member 1.
      
 0.491
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
     
 0.491
LOC103480133
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.
   
 0.485
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.471
stxbp6
Syntaxin binding protein 6 (amisyn).
    
 
 0.462
tll1
Metalloendopeptidase.
     
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.