LOC103477798 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103477798

Si:ch211-1i11.3. (1333 aa)

Predicted Functional Partners:

LOC103481589

0.977

LOC103469572

0.942

LOC103473816

0.942

ENSPREP00000000500

0.932

ern1

0.932

ppp5c

0.925

LOC103460382

0.921

dab2ip

0.921

LOC103471253

0.916

LOC103474789

0.916

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000000500	LOC103469572	ENSPREP00000000500	ENSPREP00000021110	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.940
ENSPREP00000000500	LOC103473816	ENSPREP00000000500	ENSPREP00000022240	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.940
ENSPREP00000000500	LOC103477798	ENSPREP00000000500	ENSPREP00000008648	Uncharacterized protein.	Si:ch211-1i11.3.	0.932
ENSPREP00000000500	ern1	ENSPREP00000000500	ENSPREP00000009200	Uncharacterized protein.	Endoplasmic reticulum to nucleus signaling 1.	0.901
LOC103460382	LOC103469572	ENSPREP00000023854	ENSPREP00000021110	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.917
LOC103460382	LOC103473816	ENSPREP00000023854	ENSPREP00000022240	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.917
LOC103460382	LOC103477798	ENSPREP00000023854	ENSPREP00000008648	Uncharacterized protein.	Si:ch211-1i11.3.	0.921
LOC103460382	dab2ip	ENSPREP00000023854	ENSPREP00000031852	Uncharacterized protein.	DAB2 interacting protein b.	0.902
LOC103469572	ENSPREP00000000500	ENSPREP00000021110	ENSPREP00000000500	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.940
LOC103469572	LOC103460382	ENSPREP00000021110	ENSPREP00000023854	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.917
LOC103469572	LOC103473816	ENSPREP00000021110	ENSPREP00000022240	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.902
LOC103469572	LOC103477798	ENSPREP00000021110	ENSPREP00000008648	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Si:ch211-1i11.3.	0.942
LOC103469572	dab2ip	ENSPREP00000021110	ENSPREP00000031852	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	DAB2 interacting protein b.	0.917
LOC103469572	ern1	ENSPREP00000021110	ENSPREP00000009200	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Endoplasmic reticulum to nucleus signaling 1.	0.940
LOC103471253	LOC103477798	ENSPREP00000005621	ENSPREP00000008648	Mitogen-activated protein kinase.	Si:ch211-1i11.3.	0.916
LOC103471253	LOC103481589	ENSPREP00000005621	ENSPREP00000011025	Mitogen-activated protein kinase.	Mitogen-activated protein kinase kinase 6.	0.613
LOC103473816	ENSPREP00000000500	ENSPREP00000022240	ENSPREP00000000500	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.940
LOC103473816	LOC103460382	ENSPREP00000022240	ENSPREP00000023854	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.917
LOC103473816	LOC103469572	ENSPREP00000022240	ENSPREP00000021110	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.902
LOC103473816	LOC103477798	ENSPREP00000022240	ENSPREP00000008648	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Si:ch211-1i11.3.	0.942