kcnab2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

kcnab2

Potassium voltage-gated channel subfamily A regulatory beta subunit 2. (527 aa)

Predicted Functional Partners:

nup133

0.692

ENSPREP00000032333

0.686

errfi1

0.681

sec13

0.673

nup85

0.648

seh1l

0.643

kcnf1

0.627

ENSPREP00000009708

0.627

kcnv1

0.615

LOC103476431

0.607

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000009708	kcnab2	ENSPREP00000009708	ENSPREP00000008661	Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.627
ENSPREP00000032333	kcnab2	ENSPREP00000032333	ENSPREP00000008661	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.686
ENSPREP00000032333	nup133	ENSPREP00000032333	ENSPREP00000032294	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 133.	0.999
ENSPREP00000032333	nup85	ENSPREP00000032333	ENSPREP00000002916	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
ENSPREP00000032333	sec13	ENSPREP00000032333	ENSPREP00000023034	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.999
ENSPREP00000032333	seh1l	ENSPREP00000032333	ENSPREP00000016921	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.999
LOC103476431	kcnab2	ENSPREP00000003547	ENSPREP00000008661	Potassium voltage-gated channel, subfamily H (eag-related), member 1a.	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.607
errfi1	kcnab2	ENSPREP00000008463	ENSPREP00000008661	ERBB receptor feedback inhibitor 1a.	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.681
kcnab2	ENSPREP00000009708	ENSPREP00000008661	ENSPREP00000009708	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.	0.627
kcnab2	ENSPREP00000032333	ENSPREP00000008661	ENSPREP00000032333	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.686
kcnab2	LOC103476431	ENSPREP00000008661	ENSPREP00000003547	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Potassium voltage-gated channel, subfamily H (eag-related), member 1a.	0.607
kcnab2	errfi1	ENSPREP00000008661	ENSPREP00000008463	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	ERBB receptor feedback inhibitor 1a.	0.681
kcnab2	kcnf1	ENSPREP00000008661	ENSPREP00000006336	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.	0.627
kcnab2	kcnv1	ENSPREP00000008661	ENSPREP00000022585	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	BTB domain-containing protein; Belongs to the potassium channel family.	0.615
kcnab2	nup133	ENSPREP00000008661	ENSPREP00000032294	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Nucleoporin 133.	0.692
kcnab2	nup85	ENSPREP00000008661	ENSPREP00000002916	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.648
kcnab2	sec13	ENSPREP00000008661	ENSPREP00000023034	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.673
kcnab2	seh1l	ENSPREP00000008661	ENSPREP00000016921	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.643
kcnf1	kcnab2	ENSPREP00000006336	ENSPREP00000008661	Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.627
kcnv1	kcnab2	ENSPREP00000022585	ENSPREP00000008661	BTB domain-containing protein; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 2.	0.615