STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000008788Uncharacterized protein. (649 aa)    
Predicted Functional Partners:
nup214
Nup214_FG domain-containing protein.
     
 0.596
nup50
Nucleoporin 50.
     
 0.512
rae1
Ribonucleic acid export 1.
   
 
 0.505
vps39
VPS39 subunit of HOPS complex.
   
  
 0.470
nup210
Nucleoporin 210.
     
 0.453
xpo7
Exportin 7.
    
 
 0.442
nup133
Nucleoporin 133.
   
 
 0.441
NUP62
Nucleoporin 62.
   
 
 0.411
nup58
Nucleoporin 58.
   
 
 0.411
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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