ubqln4 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ubqln4

Ubiquilin 4. (583 aa)

Predicted Functional Partners:

mysm1

0.975

uba52

0.968

psmd2

0.961

LOC103478144

0.960

LOC103472718

0.960

psmd14

0.959

psmd13

0.955

psmd8

0.951

ENSPREP00000015831

0.949

ENSPREP00000015870

0.949

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSPREP00000015831	ubqln4	ENSPREP00000015831	ENSPREP00000008822	Uncharacterized protein.	Ubiquilin 4.	0.949
ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSPREP00000015870	ubqln4	ENSPREP00000015870	ENSPREP00000008822	Uncharacterized protein.	Ubiquilin 4.	0.949
LOC103472718	mysm1	ENSPREP00000029622	ENSPREP00000031373	Proteasome 26S subunit, non-ATPase 4a.	Myb-like, SWIRM and MPN domains 1.	0.911
LOC103472718	psmd13	ENSPREP00000029622	ENSPREP00000025101	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 13.	0.993
LOC103472718	psmd14	ENSPREP00000029622	ENSPREP00000029743	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 14.	0.994
LOC103472718	psmd2	ENSPREP00000029622	ENSPREP00000015350	Proteasome 26S subunit, non-ATPase 4a.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.988
LOC103472718	psmd8	ENSPREP00000029622	ENSPREP00000024226	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 8.	0.990
LOC103472718	uba52	ENSPREP00000029622	ENSPREP00000016516	Proteasome 26S subunit, non-ATPase 4a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.949
LOC103472718	ubqln4	ENSPREP00000029622	ENSPREP00000008822	Proteasome 26S subunit, non-ATPase 4a.	Ubiquilin 4.	0.960
LOC103478144	mysm1	ENSPREP00000024642	ENSPREP00000031373	Proteasome 26S subunit, non-ATPase 4b.	Myb-like, SWIRM and MPN domains 1.	0.911
LOC103478144	psmd13	ENSPREP00000024642	ENSPREP00000025101	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 13.	0.993
LOC103478144	psmd14	ENSPREP00000024642	ENSPREP00000029743	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 14.	0.994
LOC103478144	psmd2	ENSPREP00000024642	ENSPREP00000015350	Proteasome 26S subunit, non-ATPase 4b.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.988
LOC103478144	psmd8	ENSPREP00000024642	ENSPREP00000024226	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 8.	0.990
LOC103478144	uba52	ENSPREP00000024642	ENSPREP00000016516	Proteasome 26S subunit, non-ATPase 4b.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.949
LOC103478144	ubqln4	ENSPREP00000024642	ENSPREP00000008822	Proteasome 26S subunit, non-ATPase 4b.	Ubiquilin 4.	0.960
mysm1	LOC103472718	ENSPREP00000031373	ENSPREP00000029622	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, non-ATPase 4a.	0.911
mysm1	LOC103478144	ENSPREP00000031373	ENSPREP00000024642	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, non-ATPase 4b.	0.911