STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469235Rho GTPase activating protein 17b. (805 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.942
LOC103472837
Uncharacterized protein.
   
 0.930
LOC103477991
Uncharacterized protein.
   
 0.930
RAC1
Rac family small GTPase 1.
   
 0.926
LOC103481975
Uncharacterized protein.
   
 0.926
LOC103479614
Angiomotin like 2b.
    
 0.909
amotl2
Angiomotin like 2a.
    
 0.909
rhbdf1
Rhomboid 5 homolog 1a (Drosophila).
   
  
 0.476
tbc1d16
TBC1 domain family, member 16.
      
 0.470
tbc1d1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.
      
 0.467
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.