STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef38Rho guanine nucleotide exchange factor (GEF) 38. (804 aa)    
Predicted Functional Partners:
amph
Amphiphysin.
    
 
 0.659
bin1
Bridging integrator 1a.
    
 
 0.659
LOC103457123
SH3 domain-containing protein.
    
 
 0.659
LOC103465414
Bridging integrator 2b.
    
 
 0.659
bin2
Bridging integrator 2a.
    
 
 0.659
CDC42
Cell division cycle 42.
    
 0.607
LOC103465423
Cell division cycle 42.
    
 0.607
LOC103472837
Uncharacterized protein.
    
 0.550
LOC103477993
Uncharacterized protein.
    
 0.550
LOC103477991
Uncharacterized protein.
    
 0.550
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.