STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnip1TNFAIP3 interacting protein 1. (582 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 0.979
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.948
ubb
Uncharacterized protein.
    
   0.739
LOC103473189
Uncharacterized protein.
    
   0.739
optn
Optineurin.
    
 
 0.684
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
   
 0.663
LOC103481570
Uncharacterized protein.
   
 0.663
otud7a
OTU deubiquitinase 7A.
   
 0.663
LOC103476755
Zinc finger, RAN-binding domain containing 1b.
   
 0.663
otud7b
OTU deubiquitinase 7B.
   
 0.663
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.