STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468138Collagen, type I, alpha 1a. (1359 aa)    
Predicted Functional Partners:
LOC103466132
CD44 molecule (Indian blood group) b.
    
 0.902
LOC103464268
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.900
LOC103469372
Integrin beta; Belongs to the integrin beta chain family.
    
 0.701
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.701
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.701
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.697
itgb4
Integrin, beta 4.
    
 0.697
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
    
 0.697
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.697
LOC103481979
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.693
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.