STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npntNephronectin a. (621 aa)    
Predicted Functional Partners:
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
 0.923
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.909
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
    
 0.909
LOC103480945
Uncharacterized protein.
  
  
 
0.902
Fras1
Uncharacterized protein.
   
 0.884
frem1
Fras1 related extracellular matrix 1a.
    
 0.830
frem2
FRAS1 related extracellular matrix 2a.
    
  0.815
LOC103474980
FRAS1 related extracellular matrix 2b.
    
  0.815
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.