STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
akirin1Akirin 1. (186 aa)    
Predicted Functional Partners:
psma5
Proteasome subunit alpha type.
    
   0.559
psma1
Proteasome endopeptidase complex.
    
   0.558
psma2
Proteasome endopeptidase complex.
    
   0.553
psma4
Proteasome subunit alpha type.
    
   0.546
LOC103457369
Akirin 2.
  
 
  
0.539
AKIRIN2
Akirin 2.
  
 
  
0.537
psmb2
Proteasome subunit beta.
    
   0.536
psmb3
Proteasome subunit beta.
    
   0.525
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.452
smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b.
    
 
 0.449
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.