STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474050LMBR1 domain containing 2b. (657 aa)    
Predicted Functional Partners:
capsl
Calcyphosine-like b.
 
 
  
 0.679
MEX3D
Mex-3 RNA binding family member D.
   
  
 0.536
LOC103478149
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
  
 0.532
fam214a
Family with sequence similarity 214 member A.
      
 0.526
hmg20b
High mobility group 20B.
      
 0.526
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.526
LOC103466451
Protogenin homolog b (Gallus gallus).
      
 0.526
btbd2
BTB (POZ) domain containing 2b.
      
 0.526
LOC103466454
Myosin VA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.522
chek1
Checkpoint kinase 1; Belongs to the protein kinase superfamily.
      
 0.495
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.