STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Irx5Iroquois homeobox 5a. (437 aa)    
Predicted Functional Partners:
LOC103478979
Short stature homeobox.
   
 
 0.601
irx3
Iroquois homeobox 3a.
  
  
0.583
clec11a
C-type lectin domain containing 11A.
      
 0.532
txndc11
Thioredoxin domain containing 11.
      
 0.528
ing3
Inhibitor of growth protein.
   
 
 0.518
pla2g4c
Zgc:101699.
   
  
 0.477
LOC103480175
Uncharacterized protein.
      
 0.475
sgpl1
Sphingosine-1-phosphate lyase 1.
   
  
 0.473
LOC103479586
Pre-B-cell leukemia homeobox 1a.
    
0.456
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 0.456
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.