STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP-ribosylation factor-like 13b. (405 aa)    
Predicted Functional Partners:
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.877
pde6d
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
     
 0.832
ift88
Intraflagellar transport 88 homolog.
    
 0.813
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.780
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 
 0.751
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.719
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.716
ift81
Intraflagellar transport 81 homolog.
    
 
 0.699
vps53
VPS53 subunit of GARP complex.
     
 0.688
ift46
Uncharacterized protein.
    
 
 0.676
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.