aktip protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aktip

Akt interacting protein. (296 aa)

Predicted Functional Partners:

hook2

0.890

hook1

0.810

HOOK3

0.810

fam160a2

0.741

fam160a1

0.643

LOC103480892

0.643

terf1

0.572

tnfsf13b

0.554

LOC103479189

0.528

fopnl

0.497

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOOK3	LOC103480892	ENSPREP00000010092	ENSPREP00000004921	Hook microtubule tethering protein 3.	Uncharacterized protein.	0.479
HOOK3	aktip	ENSPREP00000010092	ENSPREP00000009456	Hook microtubule tethering protein 3.	Akt interacting protein.	0.810
HOOK3	fam160a1	ENSPREP00000010092	ENSPREP00000000142	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A1a.	0.479
HOOK3	fam160a2	ENSPREP00000010092	ENSPREP00000005609	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A2.	0.479
HOOK3	hook2	ENSPREP00000010092	ENSPREP00000021239	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.473
LOC103479189	aktip	ENSPREP00000002495	ENSPREP00000009456	RIIa domain-containing protein.	Akt interacting protein.	0.528
LOC103479189	fopnl	ENSPREP00000002495	ENSPREP00000000670	RIIa domain-containing protein.	Fgfr1op N-terminal like.	0.590
LOC103480892	HOOK3	ENSPREP00000004921	ENSPREP00000010092	Uncharacterized protein.	Hook microtubule tethering protein 3.	0.479
LOC103480892	aktip	ENSPREP00000004921	ENSPREP00000009456	Uncharacterized protein.	Akt interacting protein.	0.643
LOC103480892	hook1	ENSPREP00000004921	ENSPREP00000003890	Uncharacterized protein.	Hook microtubule-tethering protein 1.	0.479
LOC103480892	hook2	ENSPREP00000004921	ENSPREP00000021239	Uncharacterized protein.	Hook microtubule-tethering protein 2.	0.551
aktip	HOOK3	ENSPREP00000009456	ENSPREP00000010092	Akt interacting protein.	Hook microtubule tethering protein 3.	0.810
aktip	LOC103479189	ENSPREP00000009456	ENSPREP00000002495	Akt interacting protein.	RIIa domain-containing protein.	0.528
aktip	LOC103480892	ENSPREP00000009456	ENSPREP00000004921	Akt interacting protein.	Uncharacterized protein.	0.643
aktip	fam160a1	ENSPREP00000009456	ENSPREP00000000142	Akt interacting protein.	Family with sequence similarity 160 member A1a.	0.643
aktip	fam160a2	ENSPREP00000009456	ENSPREP00000005609	Akt interacting protein.	Family with sequence similarity 160 member A2.	0.741
aktip	fopnl	ENSPREP00000009456	ENSPREP00000000670	Akt interacting protein.	Fgfr1op N-terminal like.	0.497
aktip	hook1	ENSPREP00000009456	ENSPREP00000003890	Akt interacting protein.	Hook microtubule-tethering protein 1.	0.810
aktip	hook2	ENSPREP00000009456	ENSPREP00000021239	Akt interacting protein.	Hook microtubule-tethering protein 2.	0.890
aktip	terf1	ENSPREP00000009456	ENSPREP00000026481	Akt interacting protein.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.572