STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTULINOTU deubiquitinase with linear linkage specificity. (399 aa)    
Predicted Functional Partners:
LOC103460775
Si:dkey-181m9.8.
    
 0.960
rnf31
Ring finger protein 31.
    
 0.960
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.935
rps27a
Ribosomal protein S27a.
    
 0.931
ubb
Uncharacterized protein.
    
 0.908
LOC103473189
Uncharacterized protein.
    
 0.908
SNX27
Sorting nexin 27.
    
 
 0.899
LOC103472691
Uncharacterized protein.
    
 
 0.899
sharpin
SHANK-associated RH domain interacting protein.
    
 0.890
ENSPREP00000009964
Ubiquitin-like domain-containing protein.
    
 0.855
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.