STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466682Zinc finger, CCHC domain containing 7. (651 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.894
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.727
TENT4A
Terminal nucleotidyltransferase 4A.
   
 
 0.682
LOC103472069
Terminal nucleotidyltransferase 4A.
   
 
 0.682
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.593
exosc10
Exosome component 10.
   
 
 0.547
papolg
Poly(A) polymerase gamma.
      
 0.528
utp18
WD_REPEATS_REGION domain-containing protein.
   
 
 0.524
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
 
 0.514
exosc1
Exosome component 1.
   
  
 0.506
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.